[00:00:00] =>> Building science/py-scikit-sparse [00:00:00] build started at 2025-08-14T09:13:46+02:00 [00:00:00] port directory: /usr/ports/science/py-scikit-sparse [00:00:00] package name: py311-scikit-sparse-0.4.16_1 [00:00:00] building for: FreeBSD pkg.mfl.dk 14.2-RELEASE-p3 FreeBSD 14.2-RELEASE-p3 amd64 [00:00:00] maintained by: yuri@FreeBSD.org [00:00:00] port version: 0.4.16 [00:00:00] port revision: 1 [00:00:00] Makefile datestamp: -rw-r--r-- 1 root wheel 1004 Aug 1 21:08 /usr/ports/science/py-scikit-sparse/Makefile [00:00:00] Ports top last git commit: fa48703a7fb1 [00:00:00] Ports top unclean checkout: no [00:00:05] =>> Inspecting /usr/local/poudriere/data/.m/142amd64-local/01//usr/ports/science/py-scikit-sparse for modifications to git checkout... no [00:00:07] Port dir last git commit: 935de0247eab [00:00:07] Port dir unclean checkout: no [00:00:07] Poudriere version: poudriere-git-3.4.99.20250724 [00:00:07] Host OSVERSION: 1402000 [00:00:07] Jail OSVERSION: 1402000 [00:00:07] Job Id: 01 [00:00:07] [00:00:07] ---Begin Environment--- [00:00:07] SHELL=/bin/sh [00:00:07] OSVERSION=1402000 [00:00:07] UNAME_v=FreeBSD 14.2-RELEASE-p3 [00:00:07] UNAME_r=14.2-RELEASE-p3 [00:00:07] BLOCKSIZE=K [00:00:07] MAIL=/var/mail/root [00:00:07] MM_CHARSET=UTF-8 [00:00:07] LANG=C.UTF-8 [00:00:07] STATUS=1 [00:00:07] HOME=/root [00:00:07] PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin [00:00:07] MAKE_OBJDIR_CHECK_WRITABLE=0 [00:00:07] LOCALBASE=/usr/local [00:00:07] USER=root [00:00:07] POUDRIERE_NAME=poudriere-git [00:00:07] POUDRIERE_VERSION=3.4.99.20250724 [00:00:07] MASTERMNT=/usr/local/poudriere/data/.m/142amd64-local/ref [00:00:07] LC_COLLATE=C [00:00:07] POUDRIERE_BUILD_TYPE=bulk [00:00:07] PACKAGE_BUILDING=yes [00:00:07] SAVED_TERM=tmux-256color [00:00:07] OUTPUT_REDIRECTED_STDERR=4 [00:00:07] OUTPUT_REDIRECTED=1 [00:00:07] PWD=/usr/local/poudriere/data/.m/142amd64-local/01/.p [00:00:07] OUTPUT_REDIRECTED_STDOUT=3 [00:00:07] P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS [00:00:07] MASTERNAME=142amd64-local [00:00:07] OLDPWD=/usr/local/poudriere/data/.m/142amd64-local/ref/.p/pool [00:00:07] POUDRIERE_PKGNAME=poudriere-git-3.4.99.20250724 [00:00:07] PREFIX=/usr/local [00:00:07] POUDRIEREPATH=/usr/local/bin/poudriere [00:00:07] ---End Environment--- [00:00:07] [00:00:07] ---Begin Poudriere Port Flags/Env--- [00:00:07] PORT_FLAGS= [00:00:07] PKGENV= [00:00:07] FLAVOR=py311 [00:00:07] MAKE_ARGS= FLAVOR=py311 [00:00:07] ---End Poudriere Port Flags/Env--- [00:00:07] [00:00:07] ---Begin OPTIONS List--- [00:00:08] ---End OPTIONS List--- [00:00:08] [00:00:08] --MAINTAINER-- [00:00:08] yuri@FreeBSD.org [00:00:08] --End MAINTAINER-- [00:00:08] [00:00:08] --PORTVERSION-- [00:00:08] 0.4.16 [00:00:08] --End PORTVERSION-- [00:00:08] [00:00:08] --PORTREVISION-- [00:00:08] 1 [00:00:08] --End PORTREVISION-- [00:00:08] [00:00:08] --CONFIGURE_ARGS-- [00:00:08] [00:00:08] --End CONFIGURE_ARGS-- [00:00:08] [00:00:08] --CONFIGURE_ENV-- [00:00:08] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" [00:00:08] --End CONFIGURE_ENV-- [00:00:08] [00:00:08] --MAKE_ENV-- [00:00:08] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" [00:00:08] --End MAKE_ENV-- [00:00:08] [00:00:08] --PLIST_SUB-- [00:00:08] PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-sparse" EXAMPLESDIR="share/examples/scikit-sparse" DATADIR="share/scikit-sparse" WWWDIR="www/scikit-sparse" ETCDIR="etc/scikit-sparse" [00:00:08] --End PLIST_SUB-- [00:00:08] [00:00:08] --SUB_LIST-- [00:00:08] PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-sparse DOCSDIR=/usr/local/share/doc/scikit-sparse EXAMPLESDIR=/usr/local/share/examples/scikit-sparse WWWDIR=/usr/local/www/scikit-sparse ETCDIR=/usr/local/etc/scikit-sparse [00:00:08] --End SUB_LIST-- [00:00:08] [00:00:08] ---Begin make.conf--- [00:00:08] USE_PACKAGE_DEPENDS=yes [00:00:08] BATCH=yes [00:00:08] WRKDIRPREFIX=/wrkdirs [00:00:08] PORTSDIR=/usr/ports [00:00:08] PACKAGES=/packages [00:00:08] DISTDIR=/distfiles [00:00:08] FORCE_PACKAGE=yes [00:00:08] PACKAGE_BUILDING=yes [00:00:08] PACKAGE_BUILDING_FLAVORS=yes [00:00:08] #### /usr/local/etc/poudriere.d/make.conf #### [00:00:08] DEFAULT_VERSIONS+= ssl=openssl [00:00:08] DEFAULT_VERSIONS+= mysql=11.4m [00:00:08] DEFAULT_VERSIONS+= pgsql=17 [00:00:08] OPTIONS_SET+= LDAP [00:00:08] OPTIONS_SET+= QT6 [00:00:08] #OPTIONS_UNSET+= X11 [00:00:08] DEFAULT_VERSIONS+= php=8.3 [00:00:08] DEFAULT_VERSIONS+= samba=4.20 [00:00:08] graphics_cairo_UNSET+= XCB [00:00:08] x11-toolkits_gtk30_UNSET += ATK_BRIDGE COLORD [00:00:08] #ALLOW_UNSUPPORTED_SYSTEM= yes [00:00:08] CCACHE_DIR= /var/cache/ccache [00:00:08] WITH_CCACHE_BUILD= yes [00:00:08] OVERLAYS+= /usr/local/share/sccache/overlay [00:00:08] SCCACHE_DIR= /var/cache/ccache/sccache [00:00:08] WITH_CCACHE_BUILD=yes [00:00:08] CCACHE_DIR=/root/.ccache [00:00:08] NO_CCACHE_DEPEND=1 [00:00:08] CCACHE_WRAPPER_PATH= /ccache/libexec/ccache [00:00:08] #### Misc Poudriere #### [00:00:08] .include "/etc/make.conf.ports_env" [00:00:08] GID=0 [00:00:08] UID=0 [00:00:08] DISABLE_MAKE_JOBS=poudriere [00:00:08] ---End make.conf--- [00:00:08] --Resource limits-- [00:00:08] cpu time (seconds, -t) unlimited [00:00:08] file size (512-blocks, -f) unlimited [00:00:08] data seg size (kbytes, -d) 33554432 [00:00:08] stack size (kbytes, -s) 524288 [00:00:08] core file size (512-blocks, -c) unlimited [00:00:08] max memory size (kbytes, -m) unlimited [00:00:08] locked memory (kbytes, -l) unlimited [00:00:08] max user processes (-u) 58500 [00:00:08] open files (-n) 8192 [00:00:08] virtual mem size (kbytes, -v) unlimited [00:00:08] swap limit (kbytes, -w) unlimited [00:00:08] socket buffer size (bytes, -b) unlimited [00:00:08] pseudo-terminals (-p) unlimited [00:00:08] kqueues (-k) unlimited [00:00:08] umtx shared locks (-o) unlimited [00:00:08] pipebuf (-y) unlimited [00:00:08] --End resource limits-- [00:00:08] =================================================== [00:00:08] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:08] ===> License BSD2CLAUSE accepted by the user [00:00:08] =========================================================================== [00:00:08] =================================================== [00:00:08] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:08] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/sbin/pkg - not found [00:00:09] ===> Installing existing package /packages/All/pkg-2.2.2.pkg [00:00:11] [pkg.mfl.dk] Installing pkg-2.2.2... [00:00:11] [pkg.mfl.dk] Extracting pkg-2.2.2: .......... done [00:00:21] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/sbin/pkg - found [00:00:21] ===> Returning to build of py311-scikit-sparse-0.4.16_1 [00:00:21] =========================================================================== [00:00:21] =================================================== [00:00:21] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:21] =========================================================================== [00:00:22] =================================================== [00:00:22] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:22] ===> License BSD2CLAUSE accepted by the user [00:00:23] => scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz doesn't seem to exist in /portdistfiles. [00:00:23] => Attempting to fetch https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz [00:00:24] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size unknown [00:00:24] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size of remote file is not known [00:00:24] scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz 404 kB 6262 kBps 00s [00:00:24] => Fetched file size mismatch (expected 414739, actual 414706) [00:00:24] => Trying next site [00:00:24] => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz [00:00:25] scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz 405 kB 10 MBps 00s [00:00:25] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16_1 for building [00:00:25] =========================================================================== [00:00:25] =================================================== [00:00:25] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:25] ===> License BSD2CLAUSE accepted by the user [00:00:25] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16_1 for building [00:00:26] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:26] =========================================================================== [00:00:26] =================================================== [00:00:26] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:26] =========================================================================== [00:00:26] =================================================== [00:00:26] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:26] ===> License BSD2CLAUSE accepted by the user [00:00:27] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16_1 for building [00:00:27] ===> Extracting for py311-scikit-sparse-0.4.16_1 [00:00:27] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:28] =========================================================================== [00:00:28] =================================================== [00:00:28] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:28] =========================================================================== [00:00:28] =================================================== [00:00:28] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:28] ===> Patching for py311-scikit-sparse-0.4.16_1 [00:00:28] =========================================================================== [00:00:28] =================================================== [00:00:28] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:29] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-numpy>=1.16,1<1.27,1 - not found [00:00:29] ===> Installing existing package /packages/All/py311-numpy-1.26.4_7,1.pkg [00:00:29] [pkg.mfl.dk] Installing py311-numpy-1.26.4_7,1... [00:00:59] [pkg.mfl.dk] `-- Installing gcc13-13.3.0_3... [00:00:59] [pkg.mfl.dk] | `-- Installing binutils-2.44,1... [00:00:59] [pkg.mfl.dk] | | `-- Installing indexinfo-0.3.1_1... [00:00:59] [pkg.mfl.dk] | | `-- Extracting indexinfo-0.3.1_1: .... done [00:00:59] [pkg.mfl.dk] | | `-- Installing zstd-1.5.7... [00:00:59] [pkg.mfl.dk] | | `-- Installing liblz4-1.10.0,1... [00:00:59] [pkg.mfl.dk] | | `-- Extracting liblz4-1.10.0,1: .......... done [00:00:59] [pkg.mfl.dk] | | `-- Extracting zstd-1.5.7: .......... done [00:01:00] [pkg.mfl.dk] | `-- Extracting binutils-2.44,1: .......... done [00:01:02] [pkg.mfl.dk] | `-- Installing gmp-6.3.0... [00:01:02] [pkg.mfl.dk] | `-- Extracting gmp-6.3.0: .......... done [00:01:03] [pkg.mfl.dk] | `-- Installing mpc-1.3.1_1... [00:01:03] [pkg.mfl.dk] | | `-- Installing mpfr-4.2.2,1... [00:01:03] [pkg.mfl.dk] | | `-- Extracting mpfr-4.2.2,1: .......... done [00:01:04] [pkg.mfl.dk] | `-- Extracting mpc-1.3.1_1: ......... done [00:01:05] [pkg.mfl.dk] `-- Extracting gcc13-13.3.0_3: .......... done [00:02:01] create symlink for gcc13 [00:02:01] create symlink for gcc13 (world) [00:02:01] create symlink for g++13 [00:02:01] create symlink for g++13 (world) [00:02:01] create symlink for cpp13 [00:02:01] create symlink for cpp13 (world) [00:02:02] [pkg.mfl.dk] `-- Installing openblas-0.3.30,2... [00:02:03] [pkg.mfl.dk] `-- Extracting openblas-0.3.30,2: .......... done [00:02:04] [pkg.mfl.dk] `-- Installing python311-3.11.13_1... [00:02:04] [pkg.mfl.dk] | `-- Installing gettext-runtime-0.23.1... [00:02:04] [pkg.mfl.dk] | `-- Extracting gettext-runtime-0.23.1: .......... done [00:02:06] [pkg.mfl.dk] | `-- Installing libffi-3.5.1... [00:02:06] [pkg.mfl.dk] | `-- Extracting libffi-3.5.1: .......... done [00:02:06] [pkg.mfl.dk] | `-- Installing mpdecimal-4.0.1... [00:02:06] [pkg.mfl.dk] | `-- Extracting mpdecimal-4.0.1: .......... done [00:02:06] [pkg.mfl.dk] | `-- Installing openssl-3.0.17,1... [00:02:07] [pkg.mfl.dk] | `-- Extracting openssl-3.0.17,1: .......... done [00:02:09] [pkg.mfl.dk] | `-- Installing readline-8.2.13_2... [00:02:09] [pkg.mfl.dk] | `-- Extracting readline-8.2.13_2: .......... done [00:02:11] [pkg.mfl.dk] `-- Extracting python311-3.11.13_1: .......... done [00:02:18] [pkg.mfl.dk] `-- Installing suitesparse-umfpack-6.3.6... [00:02:21] [pkg.mfl.dk] | `-- Installing suitesparse-amd-3.3.4... [00:02:23] [pkg.mfl.dk] | | `-- Installing suitesparse-config-7.11.0... [00:02:23] [pkg.mfl.dk] | | `-- Extracting suitesparse-config-7.11.0: .......... done [00:02:23] [pkg.mfl.dk] | `-- Extracting suitesparse-amd-3.3.4: .......... done [00:02:25] [pkg.mfl.dk] | `-- Installing suitesparse-camd-3.3.5... [00:02:25] [pkg.mfl.dk] | `-- Extracting suitesparse-camd-3.3.5: .......... done [00:02:26] [pkg.mfl.dk] | `-- Installing suitesparse-ccolamd-3.3.5... [00:02:26] [pkg.mfl.dk] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [00:02:28] [pkg.mfl.dk] | `-- Installing suitesparse-cholmod-5.3.4... [00:02:29] [pkg.mfl.dk] | | `-- Installing suitesparse-colamd-3.3.5... [00:02:29] [pkg.mfl.dk] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [00:02:29] [pkg.mfl.dk] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [00:02:33] [pkg.mfl.dk] `-- Extracting suitesparse-umfpack-6.3.6: .......... done [00:02:36] [pkg.mfl.dk] Extracting py311-numpy-1.26.4_7,1: .......... done [00:02:42] ===== [00:02:42] Message from gcc13-13.3.0_3: [00:02:42] [00:02:42] -- [00:02:42] To ensure binaries built with this toolchain find appropriate versions [00:02:42] of the necessary run-time libraries, you may want to link using [00:02:42] [00:02:42] -Wl,-rpath=/usr/local/lib/gcc13 [00:02:42] [00:02:42] For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens [00:02:42] transparently. [00:02:42] ===== [00:02:42] Message from python311-3.11.13_1: [00:02:42] [00:02:42] -- [00:02:42] Note that some standard Python modules are provided as separate ports [00:02:42] as they require additional dependencies. They are available as: [00:02:42] [00:02:42] py311-gdbm databases/py-gdbm@py311 [00:02:42] py311-sqlite3 databases/py-sqlite3@py311 [00:02:42] py311-tkinter x11-toolkits/py-tkinter@py311 [00:02:47] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:02:47] ===> Returning to build of py311-scikit-sparse-0.4.16_1 [00:02:47] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-scipy>=0.19 - not found [00:02:49] ===> Installing existing package /packages/All/py311-scipy-1.11.1_4,1.pkg [00:02:51] [pkg.mfl.dk] Installing py311-scipy-1.11.1_4,1... [00:05:51] [pkg.mfl.dk] `-- Installing blas-3.12.1... [00:05:52] [pkg.mfl.dk] `-- Extracting blas-3.12.1: ........ done [00:05:53] [pkg.mfl.dk] Extracting py311-scipy-1.11.1_4,1: .......... done [00:06:30] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-scipy>=0.19 - found [00:06:30] ===> Returning to build of py311-scikit-sparse-0.4.16_1 [00:06:31] ===> py311-scikit-sparse-0.4.16_1 depends on executable: gfortran13 - found [00:06:31] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/bin/python3.11 - found [00:06:31] ===> py311-scikit-sparse-0.4.16_1 depends on executable: gfortran13 - found [00:06:33] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-cython>=0.29.37<3 - not found [00:06:38] ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [00:06:40] [pkg.mfl.dk] Installing py311-cython-0.29.37_2... [00:06:44] [pkg.mfl.dk] Extracting py311-cython-0.29.37_2: .......... done [00:06:46] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-cython>=0.29.37<3 - found [00:06:46] ===> Returning to build of py311-scikit-sparse-0.4.16_1 [00:06:46] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-setuptools>=63.1.0 - not found [00:06:46] ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [00:06:47] [pkg.mfl.dk] Installing py311-setuptools-63.1.0_3... [00:06:47] [pkg.mfl.dk] Extracting py311-setuptools-63.1.0_3: .......... done [00:06:48] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-setuptools>=63.1.0 - found [00:06:48] ===> Returning to build of py311-scikit-sparse-0.4.16_1 [00:06:48] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/bin/python3.11 - found [00:06:48] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/bin/as - found [00:06:48] =========================================================================== [00:06:49] =================================================== [00:06:49] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:06:50] ===> py311-scikit-sparse-0.4.16_1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) [00:06:54] ===> py311-scikit-sparse-0.4.16_1 depends on shared library: libcholmod.so - found (/usr/local/lib/libcholmod.so) [00:06:56] =========================================================================== [00:06:56] =================================================== [00:06:56] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:06:56] ===> Configuring for py311-scikit-sparse-0.4.16_1 [00:07:53] /bin/sh: brew: not found [00:07:57] Compiling sksparse/cholmod.pyx because it changed. [00:07:57] [1/1] Cythonizing sksparse/cholmod.pyx [00:07:57] running config [00:07:58] =========================================================================== [00:07:58] =================================================== [00:07:58] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:07:58] ===> Building for py311-scikit-sparse-0.4.16_1 [00:07:59] /bin/sh: brew: not found [00:08:00] running build [00:08:00] running build_py [00:08:00] creating build [00:08:00] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:08:00] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:08:00] copying sksparse/test_cholmod.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:08:00] copying sksparse/__init__.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:08:00] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:00] copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:00] copying sksparse/test_data/well1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:00] copying sksparse/test_data/well1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:00] copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:00] copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:01] copying sksparse/test_data/illc1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:01] copying sksparse/test_data/illc1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:01] copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:08:02] running build_ext [00:08:02] building 'sksparse.cholmod' extension [00:08:02] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:08:02] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:08:02] cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing -fPIC -Isksparse -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/suitesparse -I/dev/null/include/suitesparse/ -I/usr/local/include/python3.11 -c sksparse/cholmod.c -o build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o [00:08:30] In file included from sksparse/cholmod.c:785: [00:08:30] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: [00:08:30] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: [00:08:30] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: [00:08:30] /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [00:08:30] 17 | #warning "Using deprecated NumPy API, disable it with " \ [00:08:30] | ^ [00:08:30] sksparse/cholmod.c:21963:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:08:30] 21963 | CYTHON_FALLTHROUGH; [00:08:30] | ^ [00:08:30] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:08:30] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:08:30] | ^ [00:08:30] sksparse/cholmod.c:21974:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:08:30] 21974 | CYTHON_FALLTHROUGH; [00:08:30] | ^ [00:08:30] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:08:30] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:08:30] | ^ [00:08:30] 3 warnings generated. [00:08:30] cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o -L/dev/null/lib -L/usr/local/lib -lcholmod -o build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so [00:08:35] =========================================================================== [00:08:35] =================================================== [00:08:35] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:08:36] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:08:36] ===> py311-scikit-sparse-0.4.16_1 depends on package: py311-scipy>=0.19 - found [00:08:36] ===> py311-scikit-sparse-0.4.16_1 depends on executable: gfortran13 - found [00:08:36] ===> py311-scikit-sparse-0.4.16_1 depends on file: /usr/local/bin/python3.11 - found [00:08:36] =========================================================================== [00:08:36] =================================================== [00:08:36] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:08:36] ===> Staging for py311-scikit-sparse-0.4.16_1 [00:08:36] ===> Generating temporary packing list [00:08:38] /bin/sh: brew: not found [00:08:38] running install [00:08:38] /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. [00:08:38] warnings.warn( [00:08:38] running build [00:08:38] running build_py [00:08:38] running build_ext [00:08:38] running install_lib [00:08:38] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11 [00:08:38] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages [00:08:38] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:08:38] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_cholmod.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:08:38] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/__init__.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:08:38] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-311.pyc [00:08:39] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/__init__.py to __init__.cpython-311.pyc [00:08:39] writing byte-compilation script '/tmp/tmpupaqxc2h.py' [00:08:39] /usr/local/bin/python3.11 /tmp/tmpupaqxc2h.py [00:08:39] removing /tmp/tmpupaqxc2h.py [00:08:39] running install_egg_info [00:08:40] running egg_info [00:08:40] creating scikit_sparse.egg-info [00:08:40] writing scikit_sparse.egg-info/PKG-INFO [00:08:40] writing dependency_links to scikit_sparse.egg-info/dependency_links.txt [00:08:40] writing requirements to scikit_sparse.egg-info/requires.txt [00:08:40] writing top-level names to scikit_sparse.egg-info/top_level.txt [00:08:40] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:08:40] reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:08:40] reading manifest template 'MANIFEST.in' [00:08:40] adding license file 'LICENSE.txt' [00:08:40] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:08:40] Copying scikit_sparse.egg-info to /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/scikit_sparse-0.4.16-py3.11.egg-info [00:08:40] running install_scripts [00:08:40] writing list of installed files to '/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.PLIST.pymodtmp' [00:08:41] ====> Compressing man pages (compress-man) [00:08:41] =========================================================================== [00:08:42] =================================================== [00:08:42] ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-08-14T07:13:46+00:00' 'PKG_NOTE_ports_top_git_hash=fa48703a7fb1' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=935de0247eab' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20250724' NO_DEPENDS=yes USER=root UID=0 GID=0 [00:08:42] ===> Building packages for py311-scikit-sparse-0.4.16_1 [00:08:44] ===> Building py311-scikit-sparse-0.4.16_1 [00:08:46] =========================================================================== [00:08:47] =>> Cleaning up wrkdir [00:08:48] ===> Cleaning for py311-scikit-sparse-0.4.16_1 [00:08:54] build of science/py-scikit-sparse@py311 | py311-scikit-sparse-0.4.16_1 ended at 2025-08-14T09:22:40+02:00 [00:08:54] build time: 00:09:02