[00:00:00] =>> Building science/py-scikit-sparse [00:00:00] build started at 2025-07-24T06:52:38+02:00 [00:00:00] port directory: /usr/ports/science/py-scikit-sparse [00:00:00] package name: py311-scikit-sparse-0.4.16 [00:00:00] building for: FreeBSD pkg.mfl.dk 14.2-RELEASE-p3 FreeBSD 14.2-RELEASE-p3 amd64 [00:00:00] maintained by: yuri@FreeBSD.org [00:00:00] port version: 0.4.16 [00:00:00] port revision: 0 [00:00:00] Makefile datestamp: -rw-r--r-- 1 root wheel 988 Apr 23 11:35 /usr/ports/science/py-scikit-sparse/Makefile [00:00:00] Ports top last git commit: 0376ab760df7 [00:00:00] Ports top unclean checkout: no [00:00:09] =>> Inspecting /usr/local/poudriere/data/.m/142amd64-local/02//usr/ports/science/py-scikit-sparse for modifications to git checkout... no [00:00:10] Port dir last git commit: 95a864ca3cfa [00:00:10] Port dir unclean checkout: no [00:00:10] Poudriere version: poudriere-git-3.4.99.20250601 [00:00:10] Host OSVERSION: 1402000 [00:00:10] Jail OSVERSION: 1402000 [00:00:10] Job Id: 02 [00:00:10] [00:00:10] ---Begin Environment--- [00:00:11] SHELL=/bin/sh [00:00:11] OSVERSION=1402000 [00:00:11] UNAME_v=FreeBSD 14.2-RELEASE-p3 [00:00:11] UNAME_r=14.2-RELEASE-p3 [00:00:11] BLOCKSIZE=K [00:00:11] MAIL=/var/mail/root [00:00:11] MM_CHARSET=UTF-8 [00:00:11] LANG=C.UTF-8 [00:00:11] STATUS=1 [00:00:11] HOME=/root [00:00:11] PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin [00:00:11] MAKE_OBJDIR_CHECK_WRITABLE=0 [00:00:11] LOCALBASE=/usr/local [00:00:11] USER=root [00:00:11] POUDRIERE_NAME=poudriere-git [00:00:11] POUDRIERE_VERSION=3.4.99.20250601 [00:00:11] MASTERMNT=/usr/local/poudriere/data/.m/142amd64-local/ref [00:00:11] LC_COLLATE=C [00:00:11] POUDRIERE_BUILD_TYPE=bulk [00:00:11] PACKAGE_BUILDING=yes [00:00:11] SAVED_TERM=tmux-256color [00:00:11] OUTPUT_REDIRECTED_STDERR=4 [00:00:11] OUTPUT_REDIRECTED=1 [00:00:11] PWD=/usr/local/poudriere/data/.m/142amd64-local/02/.p [00:00:11] OUTPUT_REDIRECTED_STDOUT=3 [00:00:11] P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS [00:00:11] MASTERNAME=142amd64-local [00:00:11] OLDPWD=/usr/local/poudriere/data/.m/142amd64-local/ref/.p/pool [00:00:11] POUDRIERE_PKGNAME=poudriere-git-3.4.99.20250601 [00:00:11] PREFIX=/usr/local [00:00:11] POUDRIEREPATH=/usr/local/bin/poudriere [00:00:11] ---End Environment--- [00:00:11] [00:00:11] ---Begin Poudriere Port Flags/Env--- [00:00:11] PORT_FLAGS= [00:00:11] PKGENV= [00:00:11] FLAVOR=py311 [00:00:11] MAKE_ARGS= FLAVOR=py311 [00:00:11] ---End Poudriere Port Flags/Env--- [00:00:11] [00:00:11] ---Begin OPTIONS List--- [00:00:11] ---End OPTIONS List--- [00:00:11] [00:00:11] --MAINTAINER-- [00:00:11] yuri@FreeBSD.org [00:00:11] --End MAINTAINER-- [00:00:11] [00:00:11] --PORTVERSION-- [00:00:11] 0.4.16 [00:00:11] --End PORTVERSION-- [00:00:11] [00:00:11] --PORTREVISION-- [00:00:11] 0 [00:00:11] --End PORTREVISION-- [00:00:11] [00:00:11] --CONFIGURE_ARGS-- [00:00:11] [00:00:11] --End CONFIGURE_ARGS-- [00:00:11] [00:00:11] --CONFIGURE_ENV-- [00:00:11] RUSTC_WRAPPER="/overlays/sccache/bin/sccache" SCCACHE_CACHE_SIZE="16G" SCCACHE_DIR="/var/cache/ccache/sccache" SCCACHE_IDLE_TIMEOUT="0" SCCACHE_MAX_FRAME_LENGTH=104857600 SCCACHE_UNIX_LISTEN="/tmp/sccache-overlay.socket" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" [00:00:11] --End CONFIGURE_ENV-- [00:00:11] [00:00:11] --MAKE_ENV-- [00:00:11] RUSTC_WRAPPER="/overlays/sccache/bin/sccache" SCCACHE_CACHE_SIZE="16G" SCCACHE_DIR="/var/cache/ccache/sccache" SCCACHE_IDLE_TIMEOUT="0" SCCACHE_MAX_FRAME_LENGTH=104857600 SCCACHE_UNIX_LISTEN="/tmp/sccache-overlay.socket" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" [00:00:11] --End MAKE_ENV-- [00:00:11] [00:00:11] --PLIST_SUB-- [00:00:11] PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-sparse" EXAMPLESDIR="share/examples/scikit-sparse" DATADIR="share/scikit-sparse" WWWDIR="www/scikit-sparse" ETCDIR="etc/scikit-sparse" [00:00:11] --End PLIST_SUB-- [00:00:11] [00:00:11] --SUB_LIST-- [00:00:11] PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-sparse DOCSDIR=/usr/local/share/doc/scikit-sparse EXAMPLESDIR=/usr/local/share/examples/scikit-sparse WWWDIR=/usr/local/www/scikit-sparse ETCDIR=/usr/local/etc/scikit-sparse [00:00:11] --End SUB_LIST-- [00:00:11] [00:00:11] ---Begin make.conf--- [00:00:11] USE_PACKAGE_DEPENDS=yes [00:00:11] BATCH=yes [00:00:11] WRKDIRPREFIX=/wrkdirs [00:00:11] PORTSDIR=/usr/ports [00:00:11] PACKAGES=/packages [00:00:11] DISTDIR=/distfiles [00:00:11] OVERLAYS+=/overlays/sccache [00:00:11] FORCE_PACKAGE=yes [00:00:11] PACKAGE_BUILDING=yes [00:00:11] PACKAGE_BUILDING_FLAVORS=yes [00:00:11] #### /usr/local/etc/poudriere.d/make.conf #### [00:00:11] DEFAULT_VERSIONS+= ssl=openssl [00:00:11] DEFAULT_VERSIONS+= mysql=11.4m [00:00:11] DEFAULT_VERSIONS+= pgsql=17 [00:00:11] OPTIONS_SET+= LDAP [00:00:11] OPTIONS_SET+= QT6 [00:00:11] #OPTIONS_UNSET+= X11 [00:00:11] DEFAULT_VERSIONS+= php=8.3 [00:00:11] graphics_cairo_UNSET+= XCB [00:00:11] x11-toolkits_gtk30_UNSET += ATK_BRIDGE COLORD [00:00:11] #ALLOW_UNSUPPORTED_SYSTEM= yes [00:00:11] CCACHE_DIR= /var/cache/ccache [00:00:11] WITH_CCACHE_BUILD= yes [00:00:11] OVERLAYS+= /usr/local/share/sccache/overlay [00:00:11] SCCACHE_DIR= /var/cache/ccache/sccache [00:00:11] WITH_CCACHE_BUILD=yes [00:00:11] CCACHE_DIR=/root/.ccache [00:00:11] NO_CCACHE_DEPEND=1 [00:00:11] CCACHE_WRAPPER_PATH= /ccache/libexec/ccache [00:00:11] #### Misc Poudriere #### [00:00:11] .include "/etc/make.conf.ports_env" [00:00:11] GID=0 [00:00:11] UID=0 [00:00:11] DISABLE_MAKE_JOBS=poudriere [00:00:11] ---End make.conf--- [00:00:11] --Resource limits-- [00:00:11] cpu time (seconds, -t) unlimited [00:00:11] file size (512-blocks, -f) unlimited [00:00:11] data seg size (kbytes, -d) 33554432 [00:00:11] stack size (kbytes, -s) 524288 [00:00:11] core file size (512-blocks, -c) unlimited [00:00:11] max memory size (kbytes, -m) unlimited [00:00:11] locked memory (kbytes, -l) unlimited [00:00:11] max user processes (-u) 58500 [00:00:11] open files (-n) 8192 [00:00:11] virtual mem size (kbytes, -v) unlimited [00:00:11] swap limit (kbytes, -w) unlimited [00:00:11] socket buffer size (bytes, -b) unlimited [00:00:11] pseudo-terminals (-p) unlimited [00:00:11] kqueues (-k) unlimited [00:00:11] umtx shared locks (-o) unlimited [00:00:11] pipebuf (-y) unlimited [00:00:11] --End resource limits-- [00:00:11] =================================================== [00:00:11] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:11] ===> License BSD2CLAUSE accepted by the user [00:00:11] =========================================================================== [00:00:11] =================================================== [00:00:11] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:12] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/sbin/pkg - not found [00:00:12] ===> Installing existing package /packages/All/pkg-2.2.1.pkg [00:00:13] [pkg.mfl.dk] Installing pkg-2.2.1... [00:00:13] [pkg.mfl.dk] Extracting pkg-2.2.1: .......... done [00:00:17] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/sbin/pkg - found [00:00:17] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:00:17] =========================================================================== [00:00:17] =================================================== [00:00:17] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:17] =========================================================================== [00:00:17] =================================================== [00:00:17] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:17] ===> License BSD2CLAUSE accepted by the user [00:00:18] => scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz doesn't seem to exist in /portdistfiles. [00:00:18] => Attempting to fetch https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz [00:00:19] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size unknown [00:00:19] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size of remote file is not known [00:00:19] scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz 404 kB 3540 kBps 01s [00:00:19] => Fetched file size mismatch (expected 414739, actual 414706) [00:00:19] => Trying next site [00:00:19] => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz [00:00:20] scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz 405 kB 14 MBps 00s [00:00:20] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:20] =========================================================================== [00:00:20] =================================================== [00:00:20] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:20] ===> License BSD2CLAUSE accepted by the user [00:00:21] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:22] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:22] =========================================================================== [00:00:23] =================================================== [00:00:23] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:23] =========================================================================== [00:00:23] =================================================== [00:00:23] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:23] ===> License BSD2CLAUSE accepted by the user [00:00:23] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:23] ===> Extracting for py311-scikit-sparse-0.4.16 [00:00:24] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:24] =========================================================================== [00:00:24] =================================================== [00:00:24] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:24] =========================================================================== [00:00:24] =================================================== [00:00:24] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:24] ===> Patching for py311-scikit-sparse-0.4.16 [00:00:25] =========================================================================== [00:00:25] =================================================== [00:00:25] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:25] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - not found [00:00:26] ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [00:00:26] [pkg.mfl.dk] Installing py311-numpy-1.26.4_6,1... [00:01:20] [pkg.mfl.dk] `-- Installing gcc13-13.3.0_3... [00:01:20] [pkg.mfl.dk] | `-- Installing binutils-2.44,1... [00:01:20] [pkg.mfl.dk] | | `-- Installing indexinfo-0.3.1_1... [00:01:20] [pkg.mfl.dk] | | `-- Extracting indexinfo-0.3.1_1: .... done [00:01:20] [pkg.mfl.dk] | | `-- Installing zstd-1.5.7... [00:01:20] [pkg.mfl.dk] | | `-- Installing liblz4-1.10.0,1... [00:01:20] [pkg.mfl.dk] | | `-- Extracting liblz4-1.10.0,1: .......... done [00:01:21] [pkg.mfl.dk] | | `-- Extracting zstd-1.5.7: .......... done [00:01:21] [pkg.mfl.dk] | `-- Extracting binutils-2.44,1: .......... done [00:01:25] [pkg.mfl.dk] | `-- Installing gmp-6.3.0... [00:01:25] [pkg.mfl.dk] | `-- Extracting gmp-6.3.0: .......... done [00:01:26] [pkg.mfl.dk] | `-- Installing mpc-1.3.1_1... [00:01:26] [pkg.mfl.dk] | | `-- Installing mpfr-4.2.2,1... [00:01:26] [pkg.mfl.dk] | | `-- Extracting mpfr-4.2.2,1: .......... done [00:01:27] [pkg.mfl.dk] | `-- Extracting mpc-1.3.1_1: ......... done [00:01:28] [pkg.mfl.dk] `-- Extracting gcc13-13.3.0_3: .......... done [00:01:41] create symlink for gcc13 [00:01:41] create symlink for gcc13 (world) [00:01:41] create symlink for g++13 [00:01:41] create symlink for g++13 (world) [00:01:41] create symlink for cpp13 [00:01:41] create symlink for cpp13 (world) [00:01:42] [pkg.mfl.dk] `-- Installing openblas-0.3.30,2... [00:01:42] [pkg.mfl.dk] `-- Extracting openblas-0.3.30,2: .......... done [00:01:46] [pkg.mfl.dk] `-- Installing python311-3.11.13... [00:01:46] [pkg.mfl.dk] | `-- Installing gettext-runtime-0.23.1... [00:01:46] [pkg.mfl.dk] | `-- Extracting gettext-runtime-0.23.1: .......... done [00:01:50] [pkg.mfl.dk] | `-- Installing libffi-3.5.1... [00:01:50] [pkg.mfl.dk] | `-- Extracting libffi-3.5.1: .......... done [00:01:50] [pkg.mfl.dk] | `-- Installing mpdecimal-4.0.1... [00:01:50] [pkg.mfl.dk] | `-- Extracting mpdecimal-4.0.1: .......... done [00:01:50] [pkg.mfl.dk] | `-- Installing openssl-3.0.17,1... [00:01:51] [pkg.mfl.dk] | `-- Extracting openssl-3.0.17,1: .......... done [00:01:56] [pkg.mfl.dk] | `-- Installing readline-8.2.13_2... [00:01:56] [pkg.mfl.dk] | `-- Extracting readline-8.2.13_2: .......... done [00:01:56] [pkg.mfl.dk] `-- Extracting python311-3.11.13: .......... done [00:02:01] [pkg.mfl.dk] `-- Installing suitesparse-umfpack-6.3.5_1... [00:02:01] [pkg.mfl.dk] | `-- Installing suitesparse-amd-3.3.3... [00:02:01] [pkg.mfl.dk] | | `-- Installing suitesparse-config-7.10.3... [00:02:01] [pkg.mfl.dk] | | `-- Extracting suitesparse-config-7.10.3: .......... done [00:02:02] [pkg.mfl.dk] | `-- Extracting suitesparse-amd-3.3.3: .......... done [00:02:03] [pkg.mfl.dk] | `-- Installing suitesparse-camd-3.3.4... [00:02:03] [pkg.mfl.dk] | `-- Extracting suitesparse-camd-3.3.4: .......... done [00:02:05] [pkg.mfl.dk] | `-- Installing suitesparse-ccolamd-3.3.4... [00:02:05] [pkg.mfl.dk] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [00:02:06] [pkg.mfl.dk] | `-- Installing suitesparse-cholmod-5.3.3... [00:02:06] [pkg.mfl.dk] | | `-- Installing suitesparse-colamd-3.3.4... [00:02:06] [pkg.mfl.dk] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [00:02:07] [pkg.mfl.dk] | `-- Extracting suitesparse-cholmod-5.3.3: .......... done [00:02:08] [pkg.mfl.dk] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [00:02:09] [pkg.mfl.dk] Extracting py311-numpy-1.26.4_6,1: .......... done [00:02:11] ===== [00:02:11] Message from gcc13-13.3.0_3: [00:02:11] [00:02:11] -- [00:02:11] To ensure binaries built with this toolchain find appropriate versions [00:02:11] of the necessary run-time libraries, you may want to link using [00:02:11] [00:02:11] -Wl,-rpath=/usr/local/lib/gcc13 [00:02:11] [00:02:11] For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens [00:02:11] transparently. [00:02:11] ===== [00:02:11] Message from python311-3.11.13: [00:02:11] [00:02:11] -- [00:02:11] Note that some standard Python modules are provided as separate ports [00:02:11] as they require additional dependencies. They are available as: [00:02:11] [00:02:11] py311-gdbm databases/py-gdbm@py311 [00:02:11] py311-sqlite3 databases/py-sqlite3@py311 [00:02:11] py311-tkinter x11-toolkits/py-tkinter@py311 [00:02:11] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:02:11] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:11] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - not found [00:02:12] ===> Installing existing package /packages/All/py311-scipy-1.11.1_4,1.pkg [00:02:12] [pkg.mfl.dk] Installing py311-scipy-1.11.1_4,1... [00:02:51] [pkg.mfl.dk] `-- Installing blas-3.12.1... [00:02:51] [pkg.mfl.dk] `-- Extracting blas-3.12.1: ........ done [00:02:51] [pkg.mfl.dk] Extracting py311-scipy-1.11.1_4,1: .......... done [00:02:56] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - found [00:02:56] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:56] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:02:56] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:02:56] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:02:56] ===> py311-scikit-sparse-0.4.16 depends on package: py311-cython>=0.29.37<3 - not found [00:02:57] ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [00:02:57] [pkg.mfl.dk] Installing py311-cython-0.29.37_2... [00:02:57] [pkg.mfl.dk] Extracting py311-cython-0.29.37_2: .......... done [00:02:58] ===> py311-scikit-sparse-0.4.16 depends on package: py311-cython>=0.29.37<3 - found [00:02:58] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:58] ===> py311-scikit-sparse-0.4.16 depends on package: py311-setuptools>=63.1.0 - not found [00:02:58] ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [00:02:58] [pkg.mfl.dk] Installing py311-setuptools-63.1.0_3... [00:02:58] [pkg.mfl.dk] Extracting py311-setuptools-63.1.0_3: .......... done [00:02:59] ===> py311-scikit-sparse-0.4.16 depends on package: py311-setuptools>=63.1.0 - found [00:02:59] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:59] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:02:59] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/as - found [00:02:59] =========================================================================== [00:02:59] =================================================== [00:02:59] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:03:00] ===> py311-scikit-sparse-0.4.16 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) [00:03:01] ===> py311-scikit-sparse-0.4.16 depends on shared library: libcholmod.so - found (/usr/local/lib/libcholmod.so) [00:03:03] =========================================================================== [00:03:03] =================================================== [00:03:03] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:03] ===> Configuring for py311-scikit-sparse-0.4.16 [00:03:03] ==> Starting sccache [00:03:05] sccache: Starting the server... [00:03:05] sccache: Listening on port 0 [00:03:05] Compile requests 0 [00:03:05] Compile requests executed 0 [00:03:05] Cache hits 0 [00:03:05] Cache misses 0 [00:03:05] Cache timeouts 0 [00:03:05] Cache read errors 0 [00:03:05] Forced recaches 0 [00:03:05] Cache write errors 0 [00:03:05] Compilation failures 0 [00:03:05] Cache errors 0 [00:03:05] Non-cacheable compilations 0 [00:03:05] Non-cacheable calls 0 [00:03:05] Non-compilation calls 0 [00:03:05] Unsupported compiler calls 0 [00:03:05] Average cache write 0.000 s [00:03:05] Average cache read miss 0.000 s [00:03:05] Average cache read hit 0.000 s [00:03:05] Failed distributed compilations 0 [00:03:05] Cache location Local disk: "/var/cache/ccache/sccache" [00:03:05] Cache size 0 bytes [00:03:05] Max cache size 16 GiB [00:03:29] /bin/sh: brew: not found [00:03:32] Compiling sksparse/cholmod.pyx because it changed. [00:03:32] [1/1] Cythonizing sksparse/cholmod.pyx [00:03:32] running config [00:03:33] =========================================================================== [00:03:33] =================================================== [00:03:33] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:33] ===> Building for py311-scikit-sparse-0.4.16 [00:03:34] /bin/sh: brew: not found [00:03:35] running build [00:03:35] running build_py [00:03:35] creating build [00:03:35] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:03:35] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:03:35] copying sksparse/__init__.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:03:35] copying sksparse/test_cholmod.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:03:36] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/illc1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/illc1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/well1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/well1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:03:36] running build_ext [00:03:36] building 'sksparse.cholmod' extension [00:03:36] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:03:36] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:03:36] cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing -fPIC -Isksparse -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/suitesparse -I/dev/null/include/suitesparse/ -I/usr/local/include/python3.11 -c sksparse/cholmod.c -o build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o [00:04:03] In file included from sksparse/cholmod.c:785: [00:04:03] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: [00:04:03] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: [00:04:03] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: [00:04:03] /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [00:04:03] 17 | #warning "Using deprecated NumPy API, disable it with " \ [00:04:03] | ^ [00:04:03] sksparse/cholmod.c:21963:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:04:03] 21963 | CYTHON_FALLTHROUGH; [00:04:03] | ^ [00:04:03] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:04:03] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:04:03] | ^ [00:04:03] sksparse/cholmod.c:21974:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:04:03] 21974 | CYTHON_FALLTHROUGH; [00:04:03] | ^ [00:04:03] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:04:03] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:04:03] | ^ [00:04:03] 3 warnings generated. [00:04:03] cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o -L/dev/null/lib -L/usr/local/lib -lcholmod -o build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so [00:04:05] =========================================================================== [00:04:05] =================================================== [00:04:05] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:04:05] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:04:06] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - found [00:04:06] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:04:06] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:04:06] =========================================================================== [00:04:06] =================================================== [00:04:06] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:04:06] ===> Staging for py311-scikit-sparse-0.4.16 [00:04:08] ===> Generating temporary packing list [00:04:09] /bin/sh: brew: not found [00:04:10] running install [00:04:10] /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. [00:04:10] warnings.warn( [00:04:10] running build [00:04:10] running build_py [00:04:10] running build_ext [00:04:10] running install_lib [00:04:10] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11 [00:04:10] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages [00:04:10] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:04:10] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_cholmod.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/__init__.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:04:10] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:04:10] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-311.pyc [00:04:10] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/__init__.py to __init__.cpython-311.pyc [00:04:10] writing byte-compilation script '/tmp/tmpfwgtvpod.py' [00:04:10] /usr/local/bin/python3.11 /tmp/tmpfwgtvpod.py [00:04:11] removing /tmp/tmpfwgtvpod.py [00:04:11] running install_egg_info [00:04:12] running egg_info [00:04:12] creating scikit_sparse.egg-info [00:04:12] writing scikit_sparse.egg-info/PKG-INFO [00:04:12] writing dependency_links to scikit_sparse.egg-info/dependency_links.txt [00:04:12] writing requirements to scikit_sparse.egg-info/requires.txt [00:04:12] writing top-level names to scikit_sparse.egg-info/top_level.txt [00:04:12] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:04:12] reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:04:12] reading manifest template 'MANIFEST.in' [00:04:12] adding license file 'LICENSE.txt' [00:04:12] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:04:12] Copying scikit_sparse.egg-info to /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/scikit_sparse-0.4.16-py3.11.egg-info [00:04:12] running install_scripts [00:04:12] writing list of installed files to '/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.PLIST.pymodtmp' [00:04:12] ====> Compressing man pages (compress-man) [00:04:13] ==> sccache statistics [00:04:13] Compile requests 0 [00:04:13] Compile requests executed 0 [00:04:13] Cache hits 0 [00:04:13] Cache misses 0 [00:04:13] Cache timeouts 0 [00:04:13] Cache read errors 0 [00:04:13] Forced recaches 0 [00:04:13] Cache write errors 0 [00:04:13] Compilation failures 0 [00:04:13] Cache errors 0 [00:04:13] Non-cacheable compilations 0 [00:04:13] Non-cacheable calls 0 [00:04:13] Non-compilation calls 0 [00:04:13] Unsupported compiler calls 0 [00:04:13] Average cache write 0.000 s [00:04:13] Average cache read miss 0.000 s [00:04:13] Average cache read hit 0.000 s [00:04:13] Failed distributed compilations 0 [00:04:13] Cache location Local disk: "/var/cache/ccache/sccache" [00:04:13] Cache size 0 bytes [00:04:13] Max cache size 16 GiB [00:04:13] =========================================================================== [00:04:13] =================================================== [00:04:13] ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-07-24T04:52:38+00:00' 'PKG_NOTE_ports_top_git_hash=0376ab760df7' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=95a864ca3cfa' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20250601' NO_DEPENDS=yes USER=root UID=0 GID=0 [00:04:14] ===> Building packages for py311-scikit-sparse-0.4.16 [00:04:15] ===> Building py311-scikit-sparse-0.4.16 [00:04:17] =========================================================================== [00:04:18] =>> Cleaning up wrkdir [00:04:19] ===> Cleaning for py311-scikit-sparse-0.4.16 [00:04:21] build of science/py-scikit-sparse@py311 | py311-scikit-sparse-0.4.16 ended at 2025-07-24T06:56:59+02:00 [00:04:21] build time: 00:04:28