[00:00:00] =>> Building science/py-scikit-sparse [00:00:00] build started at 2025-03-29T11:49:06+01:00 [00:00:00] port directory: /usr/ports/science/py-scikit-sparse [00:00:00] package name: py311-scikit-sparse-0.4.15_3 [00:00:00] building for: FreeBSD pkg.mfl.dk 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 amd64 [00:00:00] maintained by: yuri@FreeBSD.org [00:00:00] port version: 0.4.15 [00:00:00] port revision: 3 [00:00:01] Makefile datestamp: -rw-r--r-- 1 root wheel 992 Mar 8 02:33 /usr/ports/science/py-scikit-sparse/Makefile [00:00:01] Ports top last git commit: 4dd0bdb22a27 [00:00:01] Ports top unclean checkout: yes [00:00:04] =>> Inspecting /usr/local/poudriere/data/.m/141amd64-local/05//usr/ports/science/py-scikit-sparse for modifications to git checkout... yes [00:00:07] Port dir last git commit: 32b9f22d1a26 [00:00:07] Port dir unclean checkout: yes [00:00:07] Poudriere version: poudriere-git-3.4.99.20250209 [00:00:07] Host OSVERSION: 1401000 [00:00:07] Jail OSVERSION: 1401000 [00:00:07] Job Id: 05 [00:00:07] [00:00:07] ---Begin Environment--- [00:00:07] SHELL=/bin/sh [00:00:07] OSVERSION=1401000 [00:00:07] UNAME_v=FreeBSD 14.1-RELEASE-p6 [00:00:07] UNAME_r=14.1-RELEASE-p6 [00:00:07] BLOCKSIZE=K [00:00:07] MAIL=/var/mail/root [00:00:07] MM_CHARSET=UTF-8 [00:00:07] LANG=C.UTF-8 [00:00:07] STATUS=1 [00:00:07] HOME=/root [00:00:07] PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin [00:00:07] MAKE_OBJDIR_CHECK_WRITABLE=0 [00:00:07] LOCALBASE=/usr/local [00:00:07] USER=root [00:00:07] POUDRIERE_NAME=poudriere-git [00:00:07] POUDRIERE_VERSION=3.4.99.20250209 [00:00:07] MASTERMNT=/usr/local/poudriere/data/.m/141amd64-local/ref [00:00:07] LC_COLLATE=C [00:00:07] POUDRIERE_BUILD_TYPE=bulk [00:00:07] PACKAGE_BUILDING=yes [00:00:07] SAVED_TERM=tmux-256color [00:00:07] OUTPUT_REDIRECTED_STDERR=4 [00:00:07] OUTPUT_REDIRECTED=1 [00:00:07] PWD=/usr/local/poudriere/data/.m/141amd64-local/05/.p [00:00:07] OUTPUT_REDIRECTED_STDOUT=3 [00:00:07] P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS [00:00:07] MASTERNAME=141amd64-local [00:00:07] OLDPWD=/usr/local/poudriere/data/.m/141amd64-local/ref/.p/pool [00:00:07] POUDRIERE_PKGNAME=poudriere-git-3.4.99.20250209 [00:00:07] PREFIX=/usr/local [00:00:07] POUDRIEREPATH=/usr/local/bin/poudriere [00:00:07] ---End Environment--- [00:00:07] [00:00:07] ---Begin Poudriere Port Flags/Env--- [00:00:07] PORT_FLAGS= [00:00:07] PKGENV= [00:00:07] FLAVOR=py311 [00:00:07] MAKE_ARGS= FLAVOR=py311 [00:00:07] ---End Poudriere Port Flags/Env--- [00:00:07] [00:00:07] ---Begin OPTIONS List--- [00:00:07] ---End OPTIONS List--- [00:00:07] [00:00:07] --MAINTAINER-- [00:00:07] yuri@FreeBSD.org [00:00:07] --End MAINTAINER-- [00:00:07] [00:00:07] --PORTVERSION-- [00:00:07] 0.4.15 [00:00:07] --End PORTVERSION-- [00:00:07] [00:00:07] --PORTREVISION-- [00:00:07] 3 [00:00:07] --End PORTREVISION-- [00:00:07] [00:00:07] --CONFIGURE_ARGS-- [00:00:07] [00:00:07] --End CONFIGURE_ARGS-- [00:00:07] [00:00:07] --CONFIGURE_ENV-- [00:00:07] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh [00:00:07] --End CONFIGURE_ENV-- [00:00:07] [00:00:07] --MAKE_ENV-- [00:00:07] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" [00:00:07] --End MAKE_ENV-- [00:00:07] [00:00:07] --PLIST_SUB-- [00:00:07] PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-sparse" EXAMPLESDIR="share/examples/scikit-sparse" DATADIR="share/scikit-sparse" WWWDIR="www/scikit-sparse" ETCDIR="etc/scikit-sparse" [00:00:07] --End PLIST_SUB-- [00:00:07] [00:00:07] --SUB_LIST-- [00:00:07] PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-sparse DOCSDIR=/usr/local/share/doc/scikit-sparse EXAMPLESDIR=/usr/local/share/examples/scikit-sparse WWWDIR=/usr/local/www/scikit-sparse ETCDIR=/usr/local/etc/scikit-sparse [00:00:07] --End SUB_LIST-- [00:00:07] [00:00:07] ---Begin make.conf--- [00:00:07] USE_PACKAGE_DEPENDS=yes [00:00:07] BATCH=yes [00:00:07] WRKDIRPREFIX=/wrkdirs [00:00:07] PORTSDIR=/usr/ports [00:00:07] PACKAGES=/packages [00:00:07] DISTDIR=/distfiles [00:00:07] FORCE_PACKAGE=yes [00:00:07] PACKAGE_BUILDING=yes [00:00:07] PACKAGE_BUILDING_FLAVORS=yes [00:00:07] #### /usr/local/etc/poudriere.d/make.conf #### [00:00:07] DEFAULT_VERSIONS+= ssl=openssl [00:00:07] DEFAULT_VERSIONS+= mysql1.4m [00:00:07] OPTIONS_SET+= LDAP [00:00:07] OPTIONS_SET+= QT6 [00:00:07] #OPTIONS_UNSET+=X11 [00:00:07] DEFAULT_VERSIONS+= php=8.2 [00:00:07] graphics_cairo_UNSET+= XCB [00:00:07] x11-toolkits_gtk30_UNSET += ATK_BRIDGE COLORD [00:00:07] #ALLOW_UNSUPPORTED_SYSTEM=yes [00:00:07] CCACHE_DIR=/var/cache/ccache [00:00:07] WITH_CCACHE_BUILD=yes [00:00:07] WITH_CCACHE_BUILD=yes [00:00:07] CCACHE_DIR=/root/.ccache [00:00:07] #### Misc Poudriere #### [00:00:07] .include "/etc/make.conf.ports_env" [00:00:07] GID=0 [00:00:07] UID=0 [00:00:07] DISABLE_MAKE_JOBS=poudriere [00:00:07] ---End make.conf--- [00:00:07] --Resource limits-- [00:00:07] cpu time (seconds, -t) unlimited [00:00:07] file size (512-blocks, -f) unlimited [00:00:07] data seg size (kbytes, -d) 33554432 [00:00:07] stack size (kbytes, -s) 524288 [00:00:07] core file size (512-blocks, -c) unlimited [00:00:07] max memory size (kbytes, -m) unlimited [00:00:07] locked memory (kbytes, -l) unlimited [00:00:07] max user processes (-u) 58500 [00:00:07] open files (-n) 8192 [00:00:07] virtual mem size (kbytes, -v) unlimited [00:00:07] swap limit (kbytes, -w) unlimited [00:00:07] socket buffer size (bytes, -b) unlimited [00:00:07] pseudo-terminals (-p) unlimited [00:00:07] kqueues (-k) unlimited [00:00:07] umtx shared locks (-o) unlimited [00:00:07] --End resource limits-- [00:00:07] =================================================== [00:00:07] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:07] ===> License BSD2CLAUSE accepted by the user [00:00:07] =========================================================================== [00:00:07] =================================================== [00:00:07] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:07] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/sbin/pkg - not found [00:00:08] ===> Installing existing package /packages/All/pkg-2.1.0.pkg [00:00:08] [pkg.mfl.dk] Installing pkg-2.1.0... [00:00:08] [pkg.mfl.dk] Extracting pkg-2.1.0: .......... done [00:00:16] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/sbin/pkg - found [00:00:16] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:00:16] =========================================================================== [00:00:16] =================================================== [00:00:16] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:16] =========================================================================== [00:00:16] =================================================== [00:00:16] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:16] ===> License BSD2CLAUSE accepted by the user [00:00:16] => scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz doesn't seem to exist in /portdistfiles/. [00:00:17] => Attempting to fetch https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.15?dummy=/scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz [00:00:18] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.15?dummy=/scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz: size unknown [00:00:18] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.15?dummy=/scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz: size of remote file is not known [00:00:18] scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz 405 kB 7658 kBps 00s [00:00:18] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.15_3 for building [00:00:18] =========================================================================== [00:00:18] =================================================== [00:00:18] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:18] ===> License BSD2CLAUSE accepted by the user [00:00:18] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.15_3 for building [00:00:20] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz. [00:00:20] =========================================================================== [00:00:20] =================================================== [00:00:20] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:20] =========================================================================== [00:00:20] =================================================== [00:00:20] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:20] ===> License BSD2CLAUSE accepted by the user [00:00:21] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.15_3 for building [00:00:21] ===> Extracting for py311-scikit-sparse-0.4.15_3 [00:00:21] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.15_GH0.tar.gz. [00:00:21] =========================================================================== [00:00:21] =================================================== [00:00:21] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:21] =========================================================================== [00:00:21] =================================================== [00:00:21] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:22] ===> Patching for py311-scikit-sparse-0.4.15_3 [00:00:22] =========================================================================== [00:00:22] =================================================== [00:00:22] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:22] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-numpy>=1.16,1<1.27,1 - not found [00:00:22] ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [00:00:22] [pkg.mfl.dk] Installing py311-numpy-1.26.4_6,1... [00:01:06] [pkg.mfl.dk] `-- Installing gcc13-13.3.0_2... [00:01:06] [pkg.mfl.dk] | `-- Installing binutils-2.44,1... [00:01:06] [pkg.mfl.dk] | | `-- Installing indexinfo-0.3.1_1... [00:01:06] [pkg.mfl.dk] | | `-- Extracting indexinfo-0.3.1_1: .... done [00:01:06] [pkg.mfl.dk] | | `-- Installing zstd-1.5.7... [00:01:06] [pkg.mfl.dk] | | `-- Installing liblz4-1.10.0,1... [00:01:06] [pkg.mfl.dk] | | `-- Extracting liblz4-1.10.0,1: .......... done [00:01:06] [pkg.mfl.dk] | | `-- Extracting zstd-1.5.7: .......... done [00:01:07] [pkg.mfl.dk] | `-- Extracting binutils-2.44,1: .......... done [00:01:14] [pkg.mfl.dk] | `-- Installing gmp-6.3.0... [00:01:14] [pkg.mfl.dk] | `-- Extracting gmp-6.3.0: .......... done [00:01:15] [pkg.mfl.dk] | `-- Installing mpc-1.3.1_1... [00:01:15] [pkg.mfl.dk] | | `-- Installing mpfr-4.2.2,1... [00:01:15] [pkg.mfl.dk] | | `-- Extracting mpfr-4.2.2,1: .......... done [00:01:15] [pkg.mfl.dk] | `-- Extracting mpc-1.3.1_1: ......... done [00:01:16] [pkg.mfl.dk] `-- Extracting gcc13-13.3.0_2: .......... done [00:01:28] [pkg.mfl.dk] `-- Installing openblas-0.3.29_1,2... [00:01:28] [pkg.mfl.dk] `-- Extracting openblas-0.3.29_1,2: .......... done [00:01:30] [pkg.mfl.dk] `-- Installing python311-3.11.11... [00:01:30] [pkg.mfl.dk] | `-- Installing gettext-runtime-0.23.1... [00:01:30] [pkg.mfl.dk] | `-- Extracting gettext-runtime-0.23.1: .......... done [00:01:30] [pkg.mfl.dk] | `-- Installing libffi-3.4.6... [00:01:30] [pkg.mfl.dk] | `-- Extracting libffi-3.4.6: .......... done [00:01:31] [pkg.mfl.dk] | `-- Installing mpdecimal-4.0.0... [00:01:31] [pkg.mfl.dk] | `-- Extracting mpdecimal-4.0.0: .......... done [00:01:31] [pkg.mfl.dk] | `-- Installing openssl-3.0.16,1... [00:01:31] [pkg.mfl.dk] | `-- Extracting openssl-3.0.16,1: .......... done [00:02:16] [pkg.mfl.dk] | `-- Installing readline-8.2.13_2... [00:02:16] [pkg.mfl.dk] | `-- Extracting readline-8.2.13_2: .......... done [00:02:17] [pkg.mfl.dk] `-- Extracting python311-3.11.11: .......... done [00:02:21] [pkg.mfl.dk] `-- Installing suitesparse-umfpack-6.3.5_1... [00:02:21] [pkg.mfl.dk] | `-- Installing suitesparse-amd-3.3.3... [00:02:21] [pkg.mfl.dk] | | `-- Installing suitesparse-config-7.10.1... [00:02:21] [pkg.mfl.dk] | | `-- Extracting suitesparse-config-7.10.1: .......... done [00:02:21] [pkg.mfl.dk] | `-- Extracting suitesparse-amd-3.3.3: .......... done [00:02:22] [pkg.mfl.dk] | `-- Installing suitesparse-camd-3.3.3... [00:02:22] [pkg.mfl.dk] | `-- Extracting suitesparse-camd-3.3.3: .......... done [00:02:22] [pkg.mfl.dk] | `-- Installing suitesparse-ccolamd-3.3.4... [00:02:22] [pkg.mfl.dk] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [00:02:23] [pkg.mfl.dk] | `-- Installing suitesparse-cholmod-5.3.1... [00:02:23] [pkg.mfl.dk] | | `-- Installing suitesparse-colamd-3.3.4... [00:02:23] [pkg.mfl.dk] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [00:02:23] [pkg.mfl.dk] | `-- Extracting suitesparse-cholmod-5.3.1: .......... done [00:02:24] [pkg.mfl.dk] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [00:02:24] [pkg.mfl.dk] Extracting py311-numpy-1.26.4_6,1: .......... done [00:02:26] ===== [00:02:26] Message from gcc13-13.3.0_2: [00:02:26] [00:02:26] -- [00:02:26] To ensure binaries built with this toolchain find appropriate versions [00:02:26] of the necessary run-time libraries, you may want to link using [00:02:26] [00:02:26] -Wl,-rpath=/usr/local/lib/gcc13 [00:02:26] [00:02:26] For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens [00:02:26] transparently. [00:02:26] ===== [00:02:26] Message from python311-3.11.11: [00:02:26] [00:02:26] -- [00:02:26] Note that some standard Python modules are provided as separate ports [00:02:26] as they require additional dependencies. They are available as: [00:02:26] [00:02:26] py311-gdbm databases/py-gdbm@py311 [00:02:26] py311-sqlite3 databases/py-sqlite3@py311 [00:02:26] py311-tkinter x11-toolkits/py-tkinter@py311 [00:02:26] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:02:26] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:02:26] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-scipy>=0.19 - not found [00:02:27] ===> Installing existing package /packages/All/py311-scipy-1.11.1_4,1.pkg [00:02:27] [pkg.mfl.dk] Installing py311-scipy-1.11.1_4,1... [00:02:28] [pkg.mfl.dk] `-- Installing blas-3.12.1... [00:02:28] [pkg.mfl.dk] `-- Extracting blas-3.12.1: ........ done [00:02:29] [pkg.mfl.dk] Extracting py311-scipy-1.11.1_4,1: .......... done [00:02:31] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-scipy>=0.19 - found [00:02:31] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:02:31] ===> py311-scikit-sparse-0.4.15_3 depends on executable: gfortran13 - found [00:02:31] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/python3.11 - found [00:02:31] ===> py311-scikit-sparse-0.4.15_3 depends on executable: gfortran13 - found [00:02:31] ===> py311-scikit-sparse-0.4.15_3 depends on executable: cython-3.11 - not found [00:02:32] ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [00:02:32] [pkg.mfl.dk] Installing py311-cython-0.29.37_2... [00:02:32] [pkg.mfl.dk] Extracting py311-cython-0.29.37_2: .......... done [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on executable: cython-3.11 - found [00:02:32] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-setuptools>=63.1.0 - not found [00:02:32] ===> Installing existing package /packages/All/py311-setuptools-63.1.0_2.pkg [00:02:32] [pkg.mfl.dk] Installing py311-setuptools-63.1.0_2... [00:02:32] [pkg.mfl.dk] Extracting py311-setuptools-63.1.0_2: .......... done [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-setuptools>=63.1.0 - found [00:02:32] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/python3.11 - found [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/as - found [00:02:32] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/ccache - not found [00:02:32] ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [00:02:32] [pkg.mfl.dk] Installing ccache-3.7.12_8... [00:02:32] [pkg.mfl.dk] Extracting ccache-3.7.12_8: .......... done [00:02:32] Create compiler links... [00:02:32] create symlink for cc [00:02:32] create symlink for cc (world) [00:02:33] create symlink for c++ [00:02:33] create symlink for c++ (world) [00:02:33] create symlink for CC [00:02:33] create symlink for CC (world) [00:02:33] create symlink for gcc13 [00:02:33] create symlink for gcc13 (world) [00:02:33] create symlink for g++13 [00:02:33] create symlink for g++13 (world) [00:02:33] create symlink for cpp13 [00:02:33] create symlink for cpp13 (world) [00:02:33] create symlink for clang [00:02:33] create symlink for clang (world) [00:02:33] create symlink for clang++ [00:02:33] create symlink for clang++ (world) [00:02:33] ===== [00:02:33] Message from ccache-3.7.12_8: [00:02:33] [00:02:33] -- [00:02:33] NOTE: [00:02:33] Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for [00:02:33] information on using ccache with FreeBSD ports and src. [00:02:33] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/ccache - found [00:02:33] ===> Returning to build of py311-scikit-sparse-0.4.15_3 [00:02:33] =========================================================================== [00:02:33] =================================================== [00:02:33] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:02:34] ===> py311-scikit-sparse-0.4.15_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) [00:02:34] ===> py311-scikit-sparse-0.4.15_3 depends on shared library: libcholmod.so - found (/usr/local/lib/libcholmod.so) [00:02:34] =========================================================================== [00:02:34] =================================================== [00:02:34] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:02:34] ===> Configuring for py311-scikit-sparse-0.4.15_3 [00:02:38] /bin/sh: brew: not found [00:02:41] Compiling sksparse/cholmod.pyx because it changed. [00:02:41] [1/1] Cythonizing sksparse/cholmod.pyx [00:02:41] running config [00:02:42] =========================================================================== [00:02:42] =================================================== [00:02:42] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:02:42] ===> Building for py311-scikit-sparse-0.4.15_3 [00:02:43] /bin/sh: brew: not found [00:02:44] running build [00:02:44] running build_py [00:02:44] creating build [00:02:44] creating build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311 [00:02:44] creating build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse [00:02:44] copying sksparse/__init__.py -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse [00:02:44] copying sksparse/test_cholmod.py -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse [00:02:44] creating build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:44] copying sksparse/test_data/illc1033.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:44] copying sksparse/test_data/illc1850.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:44] copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:44] copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:45] copying sksparse/test_data/well1850.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:45] copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:45] copying sksparse/test_data/well1033.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:45] copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data [00:02:45] running build_ext [00:02:45] building 'sksparse.cholmod' extension [00:02:45] creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311 [00:02:45] creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse [00:02:45] cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing -fPIC -Isksparse -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/suitesparse -I/dev/null/include/suitesparse/ -I/usr/local/include/python3.11 -c sksparse/cholmod.c -o build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/cholmod.o [00:03:17] In file included from sksparse/cholmod.c:785: [00:03:17] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: [00:03:17] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: [00:03:17] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: [00:03:17] /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [00:03:17] 17 | #warning "Using deprecated NumPy API, disable it with " \ [00:03:17] | ^ [00:03:17] sksparse/cholmod.c:21963:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:03:17] 21963 | CYTHON_FALLTHROUGH; [00:03:17] | ^ [00:03:17] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:03:17] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:03:17] | ^ [00:03:17] sksparse/cholmod.c:21974:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:03:17] 21974 | CYTHON_FALLTHROUGH; [00:03:17] | ^ [00:03:17] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:03:17] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:03:17] | ^ [00:03:17] 3 warnings generated. [00:03:17] cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/cholmod.o -L/dev/null/lib -L/usr/local/lib -lcholmod -o build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/cholmod.cpython-311.so [00:03:17] =========================================================================== [00:03:17] =================================================== [00:03:17] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:03:18] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:03:18] ===> py311-scikit-sparse-0.4.15_3 depends on package: py311-scipy>=0.19 - found [00:03:18] ===> py311-scikit-sparse-0.4.15_3 depends on executable: gfortran13 - found [00:03:18] ===> py311-scikit-sparse-0.4.15_3 depends on file: /usr/local/bin/python3.11 - found [00:03:18] =========================================================================== [00:03:18] =================================================== [00:03:18] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:18] ===> Staging for py311-scikit-sparse-0.4.15_3 [00:03:19] ===> Generating temporary packing list [00:03:21] /bin/sh: brew: not found [00:03:21] running install [00:03:21] /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. [00:03:21] warnings.warn( [00:03:21] running build [00:03:21] running build_py [00:03:21] running build_ext [00:03:21] running install_lib [00:03:21] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11 [00:03:21] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages [00:03:21] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/__init__.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:21] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/illc1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/illc1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/well1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/illc1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/illc1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/well1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/well1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_data/well1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/test_cholmod.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:21] copying build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/sksparse/cholmod.cpython-311.so -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:21] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/__init__.py to __init__.cpython-311.pyc [00:03:21] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-311.pyc [00:03:21] writing byte-compilation script '/tmp/tmp7i0ggway.py' [00:03:21] /usr/local/bin/python3.11 /tmp/tmp7i0ggway.py [00:03:22] removing /tmp/tmp7i0ggway.py [00:03:22] running install_egg_info [00:03:22] running egg_info [00:03:22] creating scikit_sparse.egg-info [00:03:22] writing scikit_sparse.egg-info/PKG-INFO [00:03:22] writing dependency_links to scikit_sparse.egg-info/dependency_links.txt [00:03:22] writing requirements to scikit_sparse.egg-info/requires.txt [00:03:22] writing top-level names to scikit_sparse.egg-info/top_level.txt [00:03:22] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:22] reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:22] reading manifest template 'MANIFEST.in' [00:03:22] adding license file 'LICENSE.txt' [00:03:22] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:22] Copying scikit_sparse.egg-info to /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/scikit_sparse-0.4.15-py3.11.egg-info [00:03:22] running install_scripts [00:03:22] writing list of installed files to '/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.PLIST.pymodtmp' [00:03:23] ====> Compressing man pages (compress-man) [00:03:23] =========================================================================== [00:03:23] =================================================== [00:03:24] ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-03-29T10:49:06+00:00' 'PKG_NOTE_ports_top_git_hash=4dd0bdb22a27' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=32b9f22d1a26' 'PKG_NOTE_port_checkout_unclean=yes' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20250209' NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:24] ===> Building packages for py311-scikit-sparse-0.4.15_3 [00:03:25] ===> Building py311-scikit-sparse-0.4.15_3 [00:03:27] =========================================================================== [00:03:27] =>> Cleaning up wrkdir [00:03:27] ===> Cleaning for py311-scikit-sparse-0.4.15_3 [00:03:29] build of science/py-scikit-sparse@py311 | py311-scikit-sparse-0.4.15_3 ended at 2025-03-29T11:52:34+01:00 [00:03:29] build time: 00:03:34